STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89555.1RHH_1 domain-containing protein; Homologs of previously reported genes of unknown function. (76 aa)    
Predicted Functional Partners:
CCH89554.1
Conserved protein of unknown function; Toxic component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.995
CCH89556.1
Homologs of previously reported genes of unknown function.
       0.536
CCH85510.1
Transcriptional regulator, GntR-family; Function of strongly homologous gene; regulator.
   
    0.428
CCH87019.1
Transcriptional modulator of MazE/toxin, PemK domain; Function of strongly homologous gene; regulator.
   
 
 0.409
CCH87024.1
Putative prevent-host-death protein, putative antitoxin of TAS system, putative pemK domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
   
 
 0.409
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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