STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89557.1ABC-type nitrate/sulfonate/bicarbonate transport system, extracellular component; Function of strongly homologous gene; transporter. (324 aa)    
Predicted Functional Partners:
CCH89558.1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component; Function of strongly homologous gene; transporter.
 
  
 0.955
CCH89559.1
ABC transporter (ATP binding protein)(tauB-like); Function of strongly homologous gene; transporter.
 
  
 0.943
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
    0.938
CCH90656.1
Putative Peptidylprolyl isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
    0.938
CCH86937.1
ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter.
 
  
 0.705
CCH86244.1
ABC-type proline/glycine betaine transport permease; Function of strongly homologous gene; transporter.
 
  
 0.600
CCH86938.1
ABC transporter, permease protein; Function of strongly homologous gene; transporter.
 
  
 0.588
CCH87582.1
NADPH-dependent fmn reductase.
 
    0.525
tauD
Alpha-ketoglutarate-dependent taurine dioxygenase (fragment); Function of strongly homologous gene; enzyme.
  
  
 0.510
cysG
Uroporphyrinogen-III C-methyltransferase; Function of strongly homologous gene; enzyme.
  
  
 0.495
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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