STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89574.1Extradiol ring-cleavage dioxygenase class III protein subunit B; Function of strongly homologous gene; enzyme. (287 aa)    
Predicted Functional Partners:
CCH89575.1
Prevent-host-death family protein, antitoxin of TAS system; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.608
vapC-2
PilT domain-containing protein, toxin of TAS system; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
       0.608
CCH89573.1
Putative ADP-ribose pyrophosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.543
amiD
Amidase (modular protein); Function of strongly homologous gene; enzyme; Belongs to the amidase family.
       0.494
CCH88454.1
Homologs of previously reported genes of unknown function; Belongs to the pirin family.
 
  
 0.442
CCH86025.1
Conserved protein of unknown function, putative cupin and pirin domains; Homologs of previously reported genes of unknown function; Belongs to the pirin family.
 
  
 0.440
ribBA
Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.419
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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