STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89592.1Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator. (220 aa)    
Predicted Functional Partners:
CCH85510.1
Transcriptional regulator, GntR-family; Function of strongly homologous gene; regulator.
 
    0.467
CCH89593.1
Extracellular peptide-binding protein; Function of strongly homologous gene; transporter.
       0.451
CCH89594.1
Peptide transport permease; Function of strongly homologous gene; transporter.
       0.451
CCH89595.1
Oligopeptide/dipeptide ABC transporter, ATPase subunit; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
   
   0.445
CCH86243.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator.
 
 
0.442
oppF-3
Oligopeptide transport protein (ABC superfamily, ATP-binding protein); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ABC transporter superfamily.
       0.402
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.