STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89601.1Amino acid permease; Function of strongly homologous gene; transporter. (527 aa)    
Predicted Functional Partners:
fmdA-3
Acetamidase/formamidase; Function of strongly homologous gene; enzyme.
       0.773
CCH89602.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
 
 
   0.647
CCH87484.1
Putative transcriptional regulator, PucR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
     0.549
CCH89497.1
Putative Transcriptional regulator, PucR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.494
CCH88493.1
Transcriptional regulator, CdaR family; Function of strongly homologous gene; regulator.
 
     0.484
CCH89553.1
Putative Purine catabolism PurC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.481
nadE-2
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
 0.449
CCH87848.1
Putative amino acid permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.420
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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