Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCH89701.1Transcriptional regulator, HxlR family; Function of strongly homologous gene; regulator. (130 aa)    
Predicted Functional Partners:
CCH89702.1
Quinone oxidoreductase; Function of strongly homologous gene; enzyme.
 
     0.799
CCH89674.1
Putative transcriptional regulator, HxlR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.755
CCH86089.1
Uncharacterized protein; Homologs of previously reported genes of unknown function.
   
    0.713
CCH86023.1
Transcriptional regulator, HxlR family; Function of strongly homologous gene; regulator.
  
     0.670
CCH85602.1
Transcriptional regulator, HxlR family; Function of strongly homologous gene; regulator.
  
     0.655
recA
Recombinase A (recA); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
       0.471
CCH85819.1
Putative nucleoside-diphosphate-sugar epimerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.467
CCH86824.1
Inner membrane MSF sugar transporter; Function of strongly homologous gene; transporter.
  
     0.419
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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