STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89732.1Anti-sigma factor; Function of strongly homologous gene; factor. (227 aa)    
Predicted Functional Partners:
CCH89731.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.999
CCH90770.1
Homologs of previously reported genes of unknown function.
  
     0.657
CCH87672.1
Homologs of previously reported genes of unknown function.
  
    0.600
CCH87451.1
Homologs of previously reported genes of unknown function.
  
    0.591
CCH85822.1
Geranylgeranyl reductase; Function of strongly homologous gene; enzyme.
   
  
 0.544
CCH86449.1
Protein of unknown function; No homology to any previously reported sequences.
   
  
 0.544
CCH86450.1
Geranylgeranyl reductase family protein (fragment); Function of strongly homologous gene; enzyme.
   
  
 0.544
CCH86379.1
Homologs of previously reported genes of unknown function.
  
     0.529
CCH89730.1
Peptidase, S9C (Acylaminoacyl-peptidase) family; Function of strongly homologous gene; enzyme.
       0.512
CCH90438.1
Homologs of previously reported genes of unknown function.
  
     0.452
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.