Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CCH89732.1Anti-sigma factor; Function of strongly homologous gene; factor. (227 aa)    
Predicted Functional Partners:
CCH89731.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.998
CCH90770.1
Homologs of previously reported genes of unknown function.
  
     0.657
CCH87672.1
Homologs of previously reported genes of unknown function.
  
    0.599
CCH87451.1
Homologs of previously reported genes of unknown function.
  
    0.590
CCH86379.1
Homologs of previously reported genes of unknown function.
  
     0.529
CCH85822.1
Geranylgeranyl reductase; Function of strongly homologous gene; enzyme.
   
  
 0.516
CCH86449.1
Protein of unknown function; No homology to any previously reported sequences.
   
  
 0.516
CCH86450.1
Geranylgeranyl reductase family protein (fragment); Function of strongly homologous gene; enzyme.
   
  
 0.516
CCH89730.1
Peptidase, S9C (Acylaminoacyl-peptidase) family; Function of strongly homologous gene; enzyme.
       0.512
CCH90438.1
Homologs of previously reported genes of unknown function.
  
     0.452
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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