STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
whiGRNA polymerase sigma factor whiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (266 aa)    
Predicted Functional Partners:
fliA
RNA polymerase, sigma 28 subunit for flagellar operon; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family.
  
  
 
0.921
flgC
Flagellar basal body rod protein; Function of strongly homologous gene; structure; Belongs to the flagella basal body rod proteins family.
 
 
 0.920
flgE
Flagellar hook protein flgE; Function of strongly homologous gene; structure.
 
  
 0.912
fliN
Flagellar motor switch/type III secretory pathway protein; Function of strongly homologous gene; structure.
 
  
 0.905
flgK
Flagellar hook-associated protein FlgK; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the flagella basal body rod proteins family.
 
  
 0.905
motA
Flagellar motor protein A; Function of strongly homologous gene; structure.
 
  
 0.903
fliM
Flagellar motor switch protein; Function of strongly homologous gene; structure.
 
 
 0.891
fliG
Flagellar motor switch protein fliG; Function of strongly homologous gene; structure.
 
  
 0.888
flhA
Flagellar export pore protein; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
 
  
 0.840
fliQ
Flagellar biosynthetic protein fliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
 
  
 0.840
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.