STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
whiGRNA polymerase sigma factor whiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (266 aa)    
Predicted Functional Partners:
CCH90409.1
Homologs of previously reported genes of unknown function.
  
 
 
 0.949
fliA
RNA polymerase, sigma 28 subunit for flagellar operon; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family.
  
  
 
0.922
flgC
Flagellar basal body rod protein; Function of strongly homologous gene; structure; Belongs to the flagella basal body rod proteins family.
 
 
 0.902
flgE
Flagellar hook protein flgE; Function of strongly homologous gene; structure.
 
  
 0.892
fliG
Flagellar motor switch protein fliG; Function of strongly homologous gene; structure.
 
  
 0.890
flgK
Flagellar hook-associated protein FlgK; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the flagella basal body rod proteins family.
 
  
 0.888
motA
Flagellar motor protein A; Function of strongly homologous gene; structure.
 
  
 0.880
fliN
Flagellar motor switch/type III secretory pathway protein; Function of strongly homologous gene; structure.
 
  
 0.877
fliM
Flagellar motor switch protein; Function of strongly homologous gene; structure.
 
 
 0.877
fliC
A-type flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
  
 0.839
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.