STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCTyrosine recombinase xerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (319 aa)    
Predicted Functional Partners:
CCH90066.1
Predicted amidophosphoribosyltransferase; Function of strongly homologous gene; carrier.
   
    0.891
CCH85999.1
Prephenate dehydrogenase; Function of strongly homologous gene; enzyme.
  
    0.805
whiA
Sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
  
    0.800
CCH89974.1
Protein of unknown function; No homology to any previously reported sequences; Belongs to the SOS response-associated peptidase family.
   
    0.799
CCH86153.1
PRPP-binding protein, adenine/guanine phosphoribosyltransferase; Function of strongly homologous gene; enzyme.
   
    0.795
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.795
ftsK
DNA translocase ftsK; Function of strongly homologous gene; cell process.
 
   
 0.792
parB
Chromosome-partitioning protein parB; Function of homologous gene experimentally demonstrated in an other organism; cell process; Belongs to the ParB family.
  
  
 0.693
whiG
RNA polymerase sigma factor whiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
     
 0.673
ftsW
Cell division protein FtsW; Function of strongly homologous gene; cell process; Belongs to the SEDS family.
 
  
 0.643
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.