STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rnhBFragment of Ribonuclease HII (part 1); Function of homologous gene experimentally demonstrated in an other organism; enzyme. (234 aa)    
Predicted Functional Partners:
CCH88277.1
Two component signal transduction histidine kinase; Function of strongly homologous gene; regulator.
 
 0.857
liaS
Two component signal transduction histidine kinase involved in sensing cell wall stress response; Function of strongly homologous gene; enzyme.
 
  0.826
CCH87971.1
Two component integral membrane sensor signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
 
  0.824
CCH87195.1
Two component signal transduction histidine kinase; Function of strongly homologous gene; regulator.
 
  0.823
CCH87209.1
Two component signal transduction histidine kinase; Function of strongly homologous gene; regulator.
 
  0.823
CCH89620.1
Two component integral membrane sensor signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
 
  0.822
CCH87398.1
Putative two-component system sensor kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  0.820
CCH85690.1
Two component integral membrane signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
 
  0.808
CCH87233.1
Two component signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
 
  0.803
CCH89240.1
Two component transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator.
  
     0.775
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.