STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89829.1Dak phosphatase; Function of strongly homologous gene; enzyme. (569 aa)    
Predicted Functional Partners:
CCH87176.1
Homologs of previously reported genes of unknown function.
 
 0.995
recG
ATP-dependent DNA helicase recG; Function of strongly homologous gene; enzyme.
  
    0.922
CCH89825.1
Homologs of previously reported genes of unknown function.
 
     0.750
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
     0.715
CCH89827.1
Putative methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.705
rpmB
50S ribosomal protein L28; Function of strongly homologous gene; structure; Belongs to the bacterial ribosomal protein bL28 family.
     
 0.673
CCH89265.1
Homologs of previously reported genes of unknown function.
 
  
 0.537
rpmF
50S ribosomal protein L32 2; Function of strongly homologous gene; structure; Belongs to the bacterial ribosomal protein bL32 family.
       0.532
CCH89824.1
Homologs of previously reported genes of unknown function.
       0.532
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.491
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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