STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89834.1Transcriptional regulator, AsnC family; Function of strongly homologous gene; regulator. (77 aa)    
Predicted Functional Partners:
CCH89835.1
Homologs of previously reported genes of unknown function.
       0.684
thiL
Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.657
CCH86052.1
Arsenite-transporting ATPase; Function of strongly homologous gene; enzyme.
  
     0.573
CCH89831.1
Homologs of previously reported genes of unknown function.
       0.531
CCH89832.1
GCN5-related N-acetyltransferase; Function of strongly homologous gene; enzyme.
       0.531
CCH86051.1
Oxyanion-translocating ATPase; Function of strongly homologous gene; transporter.
  
     0.496
CCH90398.1
Homologs of previously reported genes of unknown function.
  
     0.485
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.463
sigE-2
RNA polymerase sigma-E factor; Function of strongly homologous gene; factor.
  
    0.413
CCH88931.1
Polyketide cyclase / dehydrase family protein; Function of strongly homologous gene; enzyme.
  
     0.410
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.