STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89853.1Fumarylacetoacetate hydrolase family protein; Function of strongly homologous gene; enzyme. (270 aa)    
Predicted Functional Partners:
CCH89599.1
Amidohydrolase; Function of strongly homologous gene; enzyme.
      0.879
gltX
Glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
  
  
 0.820
CCH89851.1
Putative protease (CAAX amino terminal family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.790
sucA
2-oxoglutarate decarboxylase; Function of strongly homologous gene; enzyme.
  
 0.764
CCH89854.1
Protein of unknown function; No homology to any previously reported sequences.
       0.572
hmgA
Homogentisate 1,2-dioxygenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.563
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
  0.514
CCH87608.1
Fumarylacetoacetate hydrolase family protein; Function of strongly homologous gene; enzyme.
 
  
 
0.463
gyaR
Glyoxylate reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
  0.449
fahA-2
Fumarylacetoacetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
  0.446
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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