CCH89860.1 protein (Modestobacter marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCH89860.1

Homologs of previously reported genes of unknown function. (302 aa)

Predicted Functional Partners:

CCH90037.1

0.618

CCH89894.1

0.589

CCH88045.1

0.575

CCH90185.1

0.544

CCH88706.1

0.521

serA

0.519

CCH86635.1

0.508

CCH86511.1

0.448

CCH86038.1

0.425

CCH90524.1

0.409

Your Current Organism:

Modestobacter marinus

NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCH86038.1	CCH89860.1	MODMU_0581	MODMU_4477	Exported protein of unknown function; No homology to any previously reported sequences.	Homologs of previously reported genes of unknown function.	0.425
CCH86038.1	CCH89894.1	MODMU_0581	MODMU_4511	Exported protein of unknown function; No homology to any previously reported sequences.	Homologs of previously reported genes of unknown function.	0.472
CCH86038.1	CCH90524.1	MODMU_0581	MODMU_5145	Exported protein of unknown function; No homology to any previously reported sequences.	Homologs of previously reported genes of unknown function.	0.400
CCH86511.1	CCH86635.1	MODMU_1061	MODMU_1185	Protein of unknown function; No homology to any previously reported sequences.	Homologs of previously reported genes of unknown function.	0.768
CCH86511.1	CCH88045.1	MODMU_1061	MODMU_2616	Protein of unknown function; No homology to any previously reported sequences.	Homologs of previously reported genes of unknown function.	0.574
CCH86511.1	CCH89860.1	MODMU_1061	MODMU_4477	Protein of unknown function; No homology to any previously reported sequences.	Homologs of previously reported genes of unknown function.	0.448
CCH86511.1	CCH89894.1	MODMU_1061	MODMU_4511	Protein of unknown function; No homology to any previously reported sequences.	Homologs of previously reported genes of unknown function.	0.500
CCH86511.1	CCH90037.1	MODMU_1061	MODMU_4656	Protein of unknown function; No homology to any previously reported sequences.	Homologs of previously reported genes of unknown function.	0.754
CCH86511.1	CCH90185.1	MODMU_1061	MODMU_4804	Protein of unknown function; No homology to any previously reported sequences.	Homologs of previously reported genes of unknown function.	0.771
CCH86511.1	CCH90524.1	MODMU_1061	MODMU_5145	Protein of unknown function; No homology to any previously reported sequences.	Homologs of previously reported genes of unknown function.	0.760
CCH86635.1	CCH86511.1	MODMU_1185	MODMU_1061	Homologs of previously reported genes of unknown function.	Protein of unknown function; No homology to any previously reported sequences.	0.768
CCH86635.1	CCH88045.1	MODMU_1185	MODMU_2616	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.698
CCH86635.1	CCH88706.1	MODMU_1185	MODMU_3293	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.435
CCH86635.1	CCH89860.1	MODMU_1185	MODMU_4477	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.508
CCH86635.1	CCH89894.1	MODMU_1185	MODMU_4511	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.642
CCH86635.1	CCH90037.1	MODMU_1185	MODMU_4656	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.772
CCH86635.1	CCH90185.1	MODMU_1185	MODMU_4804	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.775
CCH86635.1	CCH90524.1	MODMU_1185	MODMU_5145	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.769
CCH88045.1	CCH86511.1	MODMU_2616	MODMU_1061	Homologs of previously reported genes of unknown function.	Protein of unknown function; No homology to any previously reported sequences.	0.574
CCH88045.1	CCH86635.1	MODMU_2616	MODMU_1185	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.698