STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89894.1Homologs of previously reported genes of unknown function. (324 aa)    
Predicted Functional Partners:
sucA
2-oxoglutarate decarboxylase; Function of strongly homologous gene; enzyme.
   
 
 0.919
pknB
Two component serine/threonine-protein kinase with PASTA sensor; Function of strongly homologous gene; enzyme.
   
 
 0.869
spk
Two-component serine/threonine-protein kinase PK-1; Function of strongly homologous gene; enzyme.
   
 
 0.869
CCH86537.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.767
CCH88706.1
Homologs of previously reported genes of unknown function.
  
     0.759
CCH90037.1
Homologs of previously reported genes of unknown function.
  
     0.758
CCH88850.1
CAAX amino terminal protease; Function of strongly homologous gene; enzyme.
 
     0.757
CCH90899.1
Putative PAS/PAC light sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
 
 0.745
CCH85780.1
Serine phosphatase RsbU, regulator of sigma subunit (modular protein); Function of strongly homologous gene; enzyme.
 
 
 0.734
CCH88697.1
Homologs of previously reported genes of unknown function.
  
     0.732
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.