STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89907.1LPXTG-motif cell wall anchor domain protein; Function of strongly homologous gene; structure. (304 aa)    
Predicted Functional Partners:
CCH89908.1
Peptidase C60 sortase A and B; Function of strongly homologous gene; enzyme.
     0.921
CCH89906.1
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.719
ribBA
Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.631
CCH89587.1
Peptidase C60 sortase A and B (fragment); Function of strongly homologous gene; enzyme.
      0.591
CCH90037.1
Homologs of previously reported genes of unknown function.
  
     0.549
CCH89894.1
Homologs of previously reported genes of unknown function.
 
 
 
 0.532
CCH89905.1
Homologs of previously reported genes of unknown function.
 
   
 0.524
CCH85838.1
Putative drug resistance dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.514
CCH89579.1
Peptidase C60 sortase A and B; Function of strongly homologous gene; enzyme.
      0.498
CCH85577.1
Homologs of previously reported genes of unknown function.
  
    0.489
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.