STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89908.1Peptidase C60 sortase A and B; Function of strongly homologous gene; enzyme. (212 aa)    
Predicted Functional Partners:
CCH89907.1
LPXTG-motif cell wall anchor domain protein; Function of strongly homologous gene; structure.
     0.924
CCH89906.1
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.679
CCH85674.1
Putative transmembrane anti-sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
     0.581
CCH85677.1
Lipoprotein; Function of strongly homologous gene; lipoprotein.
 
     0.558
CCH90608.1
PTS system, fructose subfamily, IIC subunit; Function of strongly homologous gene; transporter.
 
   
 0.466
CCH89905.1
Homologs of previously reported genes of unknown function.
  
  
 0.433
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.