STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89908.1Peptidase C60 sortase A and B; Function of strongly homologous gene; enzyme. (212 aa)    
Predicted Functional Partners:
CCH89907.1
LPXTG-motif cell wall anchor domain protein; Function of strongly homologous gene; structure.
     0.921
CCH89906.1
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.670
CCH85674.1
Putative transmembrane anti-sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
     0.579
CCH85677.1
Lipoprotein; Function of strongly homologous gene; lipoprotein.
 
     0.556
CCH90608.1
PTS system, fructose subfamily, IIC subunit; Function of strongly homologous gene; transporter.
 
   
 0.461
CCH89905.1
Homologs of previously reported genes of unknown function.
     
 0.423
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.