STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89919.1Homologs of previously reported genes of unknown function. (134 aa)    
Predicted Functional Partners:
atpC
ATP synthase, epsilon subunit, F1 sector; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.754
CCH89909.1
Homologs of previously reported genes of unknown function.
     
 0.631
nucS
Putative nuclease; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
     
 0.621
CCH86131.1
Septum site determining protein; Function of strongly homologous gene; cell process.
  
     0.566
CCH86399.1
Putative transglycosylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.557
CCH87291.1
Homologs of previously reported genes of unknown function.
  
     0.541
CCH90109.1
Putative Acetyl-coenzyme A synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.536
CCH90067.1
Lipoprotein LpqB, beta-propeller domain-like protein; Function of strongly homologous gene; cell process.
  
     0.526
CCH87197.1
Homologs of previously reported genes of unknown function.
  
     0.507
CCH89338.1
Homologs of previously reported genes of unknown function.
  
     0.492
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.