STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89945.1Homologs of previously reported genes of unknown function. (278 aa)    
Predicted Functional Partners:
CCH89946.1
Homologs of previously reported genes of unknown function.
 
     0.939
CCH87089.1
Homologs of previously reported genes of unknown function.
 
     0.774
CCH89905.1
Homologs of previously reported genes of unknown function.
  
     0.705
CCH89772.1
Homologs of previously reported genes of unknown function.
  
     0.644
CCH86511.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.574
CCH89682.1
Homologs of previously reported genes of unknown function.
  
     0.565
hom
Homoserine dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.561
argS
Arginyl-tRNA synthetase; Function of strongly homologous gene; enzyme.
       0.561
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.557
CCH85577.1
Homologs of previously reported genes of unknown function.
  
     0.518
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.