STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH89950.1Homologs of previously reported genes of unknown function. (260 aa)    
Predicted Functional Partners:
CCH89949.1
ABC-type multidrug transport system, ATPase component; Function of strongly homologous gene; transporter.
 
     0.891
CCH87235.1
Homologs of previously reported genes of unknown function.
  
     0.581
CCH87738.1
Putative Glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.537
CCH88079.1
Homologs of previously reported genes of unknown function.
 
   0.501
CCH89953.1
Homologs of previously reported genes of unknown function.
 
   
 0.483
CCH89945.1
Homologs of previously reported genes of unknown function.
  
     0.481
CCH88904.1
ABC transporter membrane protein; Function of strongly homologous gene; transporter.
 
 
 0.479
cya
Family 3 adenylate cyclase; Function of strongly homologous gene; enzyme.
       0.473
sucA
2-oxoglutarate decarboxylase; Function of strongly homologous gene; enzyme.
     
 0.469
CCH86231.1
Putative ABC transporter (permease); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.467
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.