STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89955.1Peptidase S26A, superoxide dismutase maturation protease, nickel-type; Function of strongly homologous gene; enzyme. (145 aa)    
Predicted Functional Partners:
sodN
Superoxide dismutase [Ni]; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.927
CCH87391.1
Homologs of previously reported genes of unknown function.
  
     0.599
lepB
Signal peptidase I; Function of strongly homologous gene; enzyme; Belongs to the peptidase S26 family.
 
 
  0.579
CCH85720.1
Homologs of previously reported genes of unknown function.
  
     0.551
CCH86230.1
ABC-type multidrug transport system, ATPase component; Function of strongly homologous gene; transporter.
  
    0.543
CCH85542.1
Exported protein of unknown function; No homology to any previously reported sequences.
  
     0.530
CCH90380.1
Putative Predicted protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.511
CCH86764.1
Exported protein of unknown function; No homology to any previously reported sequences.
  
     0.453
CCH87333.1
F420-dependent NADP reductase; Function of strongly homologous gene; enzyme.
  
     0.424
CCH89723.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.422
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.