STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CCH89973.1Putative spermidine synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (507 aa)    
Predicted Functional Partners:
CCH89974.1
Protein of unknown function; No homology to any previously reported sequences; Belongs to the SOS response-associated peptidase family.
 
    0.802
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 0.714
fliM
Flagellar motor switch protein; Function of strongly homologous gene; structure.
   
   0.633
CCH88295.1
Aminotransferase class-III; Function of strongly homologous gene; enzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
  0.622
CCH88839.1
Acetyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
  0.622
CCH89975.1
Succinate-semialdehyde dehydrogenase [NADP+]; Function of strongly homologous gene; enzyme.
  
 0.599
CCH88587.1
Arginase; Function of strongly homologous gene; enzyme; Belongs to the arginase family.
  
 
 0.564
metK
Methionine adenosyltransferase 1 (AdoMet synthetase); Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
  
 
 0.492
CCH90716.1
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Function of strongly homologous gene; enzyme.
  
 
 0.490
CCH90718.1
Homologs of previously reported genes of unknown function.
  
 
 0.490
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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