STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH89986.1Conserved protein of unknown function, putative GAF domain; Homologs of previously reported genes of unknown function. (233 aa)    
Predicted Functional Partners:
CCH87473.1
Homologs of previously reported genes of unknown function.
 
     0.776
CCH89389.1
Homologs of previously reported genes of unknown function.
 
     0.733
CCH88672.1
Homologs of previously reported genes of unknown function.
 
     0.710
CCH88506.1
Homologs of previously reported genes of unknown function.
 
     0.695
CCH89985.1
Aldo-keto reductase [NADP+]; Function of strongly homologous gene; enzyme.
 
     0.687
xylB-3
Xylulose kinase; Function of strongly homologous gene; enzyme; Belongs to the FGGY kinase family.
       0.631
CCH89984.1
Homologs of previously reported genes of unknown function.
       0.631
CCH90658.1
Sensor protein with an histidine kinase signal transduction domain; Function of strongly homologous gene; regulator.
  
 0.626
CCH89622.1
Homologs of previously reported genes of unknown function.
  
     0.582
cysG
Uroporphyrinogen-III C-methyltransferase; Function of strongly homologous gene; enzyme.
  
 
 0.567
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.