STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH90035.1Homologs of previously reported genes of unknown function. (220 aa)    
Predicted Functional Partners:
paaB
Phenylacetate-CoA oxygenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.795
CCH88157.1
Phthalate 4,5-dioxygenase (modular protein); Function of strongly homologous gene; enzyme; Belongs to the cytochrome P450 family.
  
 0.707
pobB
Phenoxybenzoate dioxygenase subunit beta; Function of strongly homologous gene; enzyme.
  
 0.701
paaE
Phenylacetic acid degradation NADH oxidoreductase; Function of strongly homologous gene; enzyme.
  
 0.701
pobB-2
Phthalate 4,5-dioxygenase; Function of strongly homologous gene; enzyme.
  
 0.701
CCH88606.1
Flavodoxin reductase; Function of strongly homologous gene; enzyme.
  
 0.701
CCH88954.1
Homologs of previously reported genes of unknown function.
  
     0.594
CCH90424.1
Conserved protein of unknown function, putative Carboxypeptidase domain; Homologs of previously reported genes of unknown function.
  
     0.519
hisE
Phosphoribosyl-ATP pyrophosphatase; Function of strongly homologous gene; enzyme; Belongs to the PRA-PH family.
  
     0.494
CCH89317.1
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; Function of strongly homologous gene; enzyme.
 
 
 0.470
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.