STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90038.1Alpha/beta hydrolase; Function of strongly homologous gene; enzyme. (310 aa)    
Predicted Functional Partners:
deaD
DEAD/DEAH box helicase; Function of strongly homologous gene; enzyme; Belongs to the DEAD box helicase family.
  
   0.829
CCH90039.1
Homologs of previously reported genes of unknown function.
       0.797
CCH90037.1
Homologs of previously reported genes of unknown function.
 
     0.751
CCH88740.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; regulator.
  
     0.558
CCH88896.1
Acetyltransferase; Function of strongly homologous gene; enzyme.
  
     0.481
CCH89691.1
Homologs of previously reported genes of unknown function.
 
     0.441
CCH90053.1
Homologs of previously reported genes of unknown function.
  
     0.421
CCH90035.1
Homologs of previously reported genes of unknown function.
 
    0.420
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
 
    0.413
CCH90427.1
Homologs of previously reported genes of unknown function.
  
     0.402
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.