STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
CCH90040.1Transcriptional regulator, LysR family; Function of strongly homologous gene; regulator; Belongs to the LysR transcriptional regulatory family. (292 aa)    
Predicted Functional Partners:
CCH90041.1
Lysine efflux permease; Function of strongly homologous gene; transporter.
 
   
 0.963
CCH89774.1
Cell envelope-related function transcriptional attenuator common domain; Function of strongly homologous gene; regulator.
   
    0.771
CCH86023.1
Transcriptional regulator, HxlR family; Function of strongly homologous gene; regulator.
   
    0.749
sufR
Iron-sulfur cluster transcriptional regulator; Function of strongly homologous gene; factor.
   
  
 0.738
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.693
CCH90898.1
Conserved protein of unknown function, putative Ca2+-binding domain; Homologs of previously reported genes of unknown function.
  
 
 0.655
CCH85510.1
Transcriptional regulator, GntR-family; Function of strongly homologous gene; regulator.
   
  
 0.642
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.626
cobB-2
Sir2-family regulator protein; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.581
CCH88999.1
Silent information regulator protein Sir2; Function of homologous gene experimentally demonstrated in an other organism; regulator.
   
    0.581
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.