STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90043.1Homologs of previously reported genes of unknown function. (274 aa)    
Predicted Functional Partners:
uvrD
DNA/RNA helicase, superfamily I; Function of strongly homologous gene; enzyme.
   
  0.758
CCH90045.1
Homologs of previously reported genes of unknown function.
 
     0.709
CCH90235.1
Homologs of previously reported genes of unknown function.
  
     0.629
CCH90044.1
Putative metal-dependent phosphoesterase, PHP family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.616
CCH88856.1
Homologs of previously reported genes of unknown function.
  
     0.575
CCH88615.1
Conserved protein of unknown function, putative Tetratricopeptide repeats; Homologs of previously reported genes of unknown function.
  
     0.548
CCH88754.1
Exported protein of unknown function; No homology to any previously reported sequences.
  
     0.542
uvrD-2
DNA/RNA helicase, superfamily I; Function of strongly homologous gene; enzyme; Belongs to the helicase family. UvrD subfamily.
 
 
  0.530
pcrA
ATP-dependent DNA helicase pcrA; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  0.529
CCH90046.1
Homologs of previously reported genes of unknown function.
       0.474
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.