STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90057.1DNA-binding protein, excisionase family; Function of strongly homologous gene; enzyme. (80 aa)    
Predicted Functional Partners:
CCH90056.1
Homologs of previously reported genes of unknown function; putative enzyme.
 
   
 0.926
CCH90055.1
ATPase involved in chromosome partitioning; Function of strongly homologous gene; enzyme.
 
     0.913
CCH90058.1
Homologs of previously reported genes of unknown function.
  
   
 0.807
CCH86665.1
Type II secretion system protein TadB; Function of strongly homologous gene; transporter.
  
     0.773
CCH86666.1
Type II secretion system F protein; Function of strongly homologous gene; cell process.
  
     0.755
CCH85967.1
Homologs of previously reported genes of unknown function.
  
     0.726
CCH90198.1
2'-5' RNA ligase; Function of strongly homologous gene; enzyme.
  
     0.674
CCH86669.1
Homologs of previously reported genes of unknown function.
  
     0.656
CCH86668.1
Homologs of previously reported genes of unknown function.
  
     0.628
CCH90059.1
Homologs of previously reported genes of unknown function.
  
     0.621
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.