STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90057.1DNA-binding protein, excisionase family; Function of strongly homologous gene; enzyme. (80 aa)    
Predicted Functional Partners:
CCH90056.1
Homologs of previously reported genes of unknown function; putative enzyme.
 
   
 0.915
CCH90055.1
ATPase involved in chromosome partitioning; Function of strongly homologous gene; enzyme.
 
     0.914
CCH90608.1
PTS system, fructose subfamily, IIC subunit; Function of strongly homologous gene; transporter.
     
  0.910
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
  0.902
CCH90058.1
Homologs of previously reported genes of unknown function.
  
   
 0.774
CCH86665.1
Type II secretion system protein TadB; Function of strongly homologous gene; transporter.
  
     0.773
korA
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; Function of strongly homologous gene; enzyme.
     
 0.762
CCH86666.1
Type II secretion system F protein; Function of strongly homologous gene; cell process.
  
     0.755
CCH85967.1
Homologs of previously reported genes of unknown function.
  
     0.726
CCH90198.1
2'-5' RNA ligase; Function of strongly homologous gene; enzyme.
  
     0.674
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.