STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90079.1Homologs of previously reported genes of unknown function. (152 aa)    
Predicted Functional Partners:
CCH90077.1
Homologs of previously reported genes of unknown function.
 
     0.719
CCH87291.1
Homologs of previously reported genes of unknown function.
  
     0.712
CCH89331.1
Homologs of previously reported genes of unknown function.
  
     0.670
MODMU_4496
Fragment of HNH endonuclease (part 1); Function of strongly homologous gene; enzyme.
  
     0.660
CCH87179.1
DNA polymerase III, delta subunit; Function of strongly homologous gene; enzyme.
  
     0.658
rbpA
Conserved protein of unknown function; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.649
CCH89794.1
Homologs of previously reported genes of unknown function.
  
     0.633
CCH86288.1
Homologs of previously reported genes of unknown function.
  
     0.631
opcA
Glucose-6-P dehydrogenase subunit; Function of strongly homologous gene; enzyme.
  
     0.608
CCH90080.1
Membrane protein of unknown function; No homology to any previously reported sequences.
       0.608
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.