STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH90089.1Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter. (566 aa)    
Predicted Functional Partners:
CCH90107.1
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; Function of strongly homologous gene; enzyme; Belongs to the UbiA prenyltransferase family.
 
  
 0.895
CCH90100.1
Function of strongly homologous gene; enzyme.
  
  
 0.886
CCH89774.1
Cell envelope-related function transcriptional attenuator common domain; Function of strongly homologous gene; regulator.
     
  0.707
CCH87740.1
Phosphoesterase PA-phosphatase related protein; Function of strongly homologous gene; enzyme.
  
  
 0.687
CCH85647.1
Cell envelope-related transcriptional attenuator.
     
 0.626
CCH90102.1
Cell envelope-related function transcriptional attenuator common domain; Function of strongly homologous gene; regulator.
     
 0.626
CCH85545.1
Homologs of previously reported genes of unknown function.
  
     0.620
CCH90158.1
Homologs of previously reported genes of unknown function.
 
  
 0.603
ubiA
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; Function of strongly homologous gene; enzyme.
  
  
 0.572
CCH90096.1
Glycosyltransferase; Function of strongly homologous gene; enzyme.
 
  
 0.563
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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