Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rfbD-2UDP-galactopyranose mutase; Function of strongly homologous gene; enzyme. (395 aa)    
Predicted Functional Partners:
CCH90096.1
Glycosyltransferase; Function of strongly homologous gene; enzyme.
 
  
 0.962
galE-3
UDP-glucose 4-epimerase; Function of strongly homologous gene; enzyme.
    
 0.935
rfbB-2
dTDP-D-glucose 4,6-dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.934
strM
dTDP-4-dehydrorhamnose 3,5-epimerase; Function of strongly homologous gene; enzyme.
  
  
 0.932
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.930
exoB
UDP-glucose 4-epimerase; Function of strongly homologous gene; enzyme.
 
  
 0.888
galE-2
UDP-glucose 4-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.879
CCH90097.1
Glycosyl transferase family 2; Function of strongly homologous gene; enzyme.
 
  
 0.866
capI
UDP-glucose epimerase; Function of strongly homologous gene; enzyme.
 
  
 0.855
rkpK
UDP-glucose 6-dehydrogenase; Function of strongly homologous gene; enzyme.
  
  
 0.850
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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