STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbD-2UDP-galactopyranose mutase; Function of strongly homologous gene; enzyme. (395 aa)    
Predicted Functional Partners:
CCH90096.1
Glycosyltransferase; Function of strongly homologous gene; enzyme.
 
  
 0.968
galE-3
UDP-glucose 4-epimerase; Function of strongly homologous gene; enzyme.
  
 
 0.949
exoB
UDP-glucose 4-epimerase; Function of strongly homologous gene; enzyme.
 
  
 0.935
galE-2
UDP-glucose 4-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.930
CCH86270.1
Putative NDP-sugar epimerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.928
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.928
strM
dTDP-4-dehydrorhamnose 3,5-epimerase; Function of strongly homologous gene; enzyme.
  
  
 0.926
CCH86868.1
Nucleoside-diphosphate-sugar epimerase; Function of strongly homologous gene; enzyme.
  
 
 0.918
galT
Galactose-1-phosphate uridylyltransferase; Function of strongly homologous gene; enzyme.
    
 0.911
rfbB-2
dTDP-D-glucose 4,6-dehydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.890
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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