STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH90099.1ABC-2 type transporter; Function of strongly homologous gene; transporter. (277 aa)    
Predicted Functional Partners:
CCH90098.1
Putative O-antigen/LPS export system ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.999
CCH90097.1
Glycosyl transferase family 2; Function of strongly homologous gene; enzyme.
 
  
 0.987
rfbD-2
UDP-galactopyranose mutase; Function of strongly homologous gene; enzyme.
  
  
 0.823
CCH90100.1
Function of strongly homologous gene; enzyme.
 
     0.752
CCH90093.1
Glycosyltransferase; Function of strongly homologous gene; enzyme.
 
  
 0.695
CCH90096.1
Glycosyltransferase; Function of strongly homologous gene; enzyme.
 
  
 0.695
CCH90185.1
Homologs of previously reported genes of unknown function.
  
     0.666
CCH90158.1
Homologs of previously reported genes of unknown function.
 
  
 0.616
CCH89867.1
Homologs of previously reported genes of unknown function.
  
     0.601
CCH85980.1
Putative D,D-heptose 1,7-bisphosphate phosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.581
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.