Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH90100.1Function of strongly homologous gene; enzyme. (1046 aa)    
Predicted Functional Partners:
CCH90089.1
Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
  
  
 0.886
CCH90158.1
Homologs of previously reported genes of unknown function.
 
     0.832
CCH90097.1
Glycosyl transferase family 2; Function of strongly homologous gene; enzyme.
 
   
 0.826
acpP
Acyl carrier protein (ACP); Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
 
 0.792
CCH90099.1
ABC-2 type transporter; Function of strongly homologous gene; transporter.
 
     0.752
CCH90094.1
Putative Arabinofuranosyltransferase aftA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.709
CCH90098.1
Putative O-antigen/LPS export system ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   
 0.627
CCH85545.1
Homologs of previously reported genes of unknown function.
  
   
 0.626
CCH90223.1
Monofunctional chorismate mutase; Function of strongly homologous gene; enzyme.
  
     0.621
CCH89715.1
Phage shock protein A, PspA; Function of strongly homologous gene; cell process.
  
     0.596
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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