STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH90113.1Homologs of previously reported genes of unknown function. (179 aa)    
Predicted Functional Partners:
CCH90130.1
Putative acyltransferase 3; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.547
CCH87432.1
Hydrolase; Function of strongly homologous gene; enzyme.
   
  
 0.531
CCH86710.1
Homologs of previously reported genes of unknown function.
  
     0.474
CCH90115.1
Homologs of previously reported genes of unknown function.
 
     0.435
CCH85539.1
Integral membrane transporter; Function of strongly homologous gene; transporter.
  
 0.434
CCH86614.1
Homologs of previously reported genes of unknown function.
  
 0.434
CCH87945.1
Putative zinc metalloendopeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.434
CCH88181.1
Glycoside hydrolase family 2, sugar binding; Function of strongly homologous gene; enzyme.
  
 0.434
CCH88291.1
Transcriptional regulator, XRE family; Function of strongly homologous gene; factor.
  
     0.434
aglA
Glycosidase; Function of strongly homologous gene; enzyme.
      
 0.426
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.