STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH90126.1Homologs of previously reported genes of unknown function. (166 aa)    
Predicted Functional Partners:
purE-2
Phosphoribosylaminoimidazole carboxylase catalytic subunit (AIR carboxylase) (AIRC); Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.671
purK
Phosphoribosylaminoimidazole carboxylase ATPase subunit; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
       0.671
CCH88915.1
Transcriptional regulator; Function of strongly homologous gene; regulator.
  
     0.537
asp
Aspartate aminotransferase; Function of strongly homologous gene; enzyme.
 
   
 0.526
CCH87738.1
Putative Glycosyl transferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.510
CCH90057.1
DNA-binding protein, excisionase family; Function of strongly homologous gene; enzyme.
  
    0.510
CCH90123.1
Acyl-CoA dehydrogenase; Function of strongly homologous gene; enzyme.
       0.458
CCH87226.1
Homologs of previously reported genes of unknown function.
  
    0.450
CCH89379.1
Homologs of previously reported genes of unknown function.
 
     0.433
CCH90385.1
DNA binding domain protein, excisionase family; Function of strongly homologous gene; enzyme.
  
    0.418
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.