STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CCH90130.1Putative acyltransferase 3; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (490 aa)    
Predicted Functional Partners:
sbcD
Exonuclease I SbcCD, subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.796
CCH90127.1
Putative ATP-dependent dsDNA exonuclease (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.768
CCH90128.1
Putative ATP-dependent dsDNA exonuclease (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.768
CCH89406.1
Protein of unknown function, putative recB domain; No homology to any previously reported sequences.
  
    0.682
wcaJ-2
Undecaprenyl-phosphate galactose phosphotransferase; Function of strongly homologous gene; enzyme.
     
 0.564
CCH90113.1
Homologs of previously reported genes of unknown function.
 
   
 0.547
CCH89962.1
Homologs of previously reported genes of unknown function.
      
 0.481
CCH90131.1
Homologs of previously reported genes of unknown function.
       0.455
CCH90089.1
Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
    
 0.451
CCH90835.1
Carbamoyl transferase; Function of strongly homologous gene; enzyme.
    
 0.445
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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