STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
CCH90157.1Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (230 aa)    
Predicted Functional Partners:
CCH88452.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
  
 
  0.796
CCH90611.1
Putative short-chain dehydrogenase/reductase SDR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
  0.789
CCH87997.1
Short-chain alcohol dehydrogenase; Function of strongly homologous gene; enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
  0.782
CCH87543.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
  
 
  0.781
CCH90158.1
Homologs of previously reported genes of unknown function.
       0.774
ispD
4-diphosphocytidyl-2-methyl-D-erythritol synthase; Function of strongly homologous gene; enzyme.
       0.766
CCH90765.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
  
 
  0.766
gltB
Glutamate synthase [NADPH] large chain (NADPH-GOGAT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
    
  0.754
CCH89058.1
3-ketoacyl-CoA reductase; Function of strongly homologous gene; enzyme.
  
 
  0.699
fabD
Acyl-carrier-protein S-malonyltransferase; Function of strongly homologous gene; enzyme.
  
 
 0.621
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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