STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90165.1Putative Transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (1462 aa)    
Predicted Functional Partners:
alaS
Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.962
CCH88014.1
Phosphatidylinositol 3-and 4-kinase; Function of strongly homologous gene; enzyme.
    
 0.924
acuC
Acetoin dehydrogenase; Function of strongly homologous gene; enzyme.
    
 0.902
CCH87585.1
Sulfotransferase.
  
 0.855
CCH88615.1
Conserved protein of unknown function, putative Tetratricopeptide repeats; Homologs of previously reported genes of unknown function.
   
 0.855
CCH88618.1
Homologs of previously reported genes of unknown function.
  
 0.855
CCH88696.1
Homologs of previously reported genes of unknown function.
  
 0.855
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.855
CCH90925.1
Conserved protein of unknown function, putative Tetratricopeptide TPR_2 repeats; Homologs of previously reported genes of unknown function.
  
 0.855
CCH85641.1
Homologs of previously reported genes of unknown function.
   
 0.843
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.