STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90167.1NAD-dependent epimerase/dehydratase; Function of strongly homologous gene; enzyme. (287 aa)    
Predicted Functional Partners:
CCH88446.1
Gluconolactonase; Function of strongly homologous gene; enzyme.
     0.851
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
     
  0.800
uxaC
Uronate isomerase; Function of strongly homologous gene; enzyme.
     
  0.800
uidA
Beta-glucuronidase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 2 family.
     
  0.800
uidA-2
Beta-glucuronidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glycosyl hydrolase 2 family.
     
  0.800
uxaC-2
Uronate isomerase; Function of strongly homologous gene; enzyme.
     
  0.800
CCH90168.1
Putative phosphomannomutase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.783
punA
Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
     
 0.779
CCH86337.1
Gluconolactonase; Function of strongly homologous gene; enzyme.
     0.642
rpsZ
30S ribosomal protein S14 type Z; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
  0.574
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.