STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH90189.1ABC-type multidrug transport system, ATPase component; Function of strongly homologous gene; enzyme. (285 aa)    
Predicted Functional Partners:
CCH90188.1
ABC-type multidrug transport system, permease component; Function of strongly homologous gene; transporter.
 
  0.960
CCH86521.1
ABC-2 type transporter; Function of strongly homologous gene; transporter.
 
  0.820
CCH86457.1
ABC-2 type transporter; Function of strongly homologous gene; transporter.
 
 
  0.730
CCH87592.1
Amino acid ABC transporter membrane protein (fragment).
   
  0.710
CCH88806.1
ABC-type branched-chain amino acid transport systems, ATPase component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
 
  
 
0.669
CCH90774.1
ABC-type multidrug transport system, permease component; Function of strongly homologous gene; transporter.
 
 
 0.667
drrB
Daunorubicin resistance transmembrane protein; Function of strongly homologous gene; transporter.
 
 
 0.614
CCH89370.1
ABC-2 type transporter (modular protein); Function of strongly homologous gene; transporter.
 
 
 0.611
CCH86072.1
ABC-type multidrug transport system, permease component; Function of strongly homologous gene; transporter.
 
 
  0.591
CCH86440.1
ABC-type polysaccharide/polyol phosphate export systems, permease component; Function of strongly homologous gene; transporter.
 
 
 0.591
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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