STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CCH90194.1ABC transporter (ATP-binding protein); Function of strongly homologous gene; transporter. (514 aa)    
Predicted Functional Partners:
CCH90193.1
ABC transporter membrane protein; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 0.993
CCH90192.1
Nucleoside ABC transporter membrane protein; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 0.990
CCH90195.1
ABC-type transport system substrate-binding protein; Function of strongly homologous gene; transporter.
 
 0.981
CCH89548.1
ABC transporter, inner membrane subunit; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 0.962
CCH89549.1
ABC-type transport permease; Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 0.960
CCH89551.1
ABC transporter substrate-binding protein; Function of strongly homologous gene; transporter.
 
 
 0.936
ccd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.817
deoA
Thymidine phosphorylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.814
rbsC
ABC transporter, Membrane component (putative high-affinity D-ribose transport protein); Function of strongly homologous gene; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
     0.503
CCH90188.1
ABC-type multidrug transport system, permease component; Function of strongly homologous gene; transporter.
       0.503
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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