STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90198.12'-5' RNA ligase; Function of strongly homologous gene; enzyme. (198 aa)    
Predicted Functional Partners:
trpS
Tryptophanyl-tRNA synthetase 1; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.842
CCH90057.1
DNA-binding protein, excisionase family; Function of strongly homologous gene; enzyme.
  
     0.674
CCH87197.1
Homologs of previously reported genes of unknown function.
  
     0.633
hisC-2
Histidinol-phosphate transaminase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
       0.616
CCH90056.1
Homologs of previously reported genes of unknown function; putative enzyme.
  
     0.603
CCH90109.1
Putative Acetyl-coenzyme A synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.577
CCH90055.1
ATPase involved in chromosome partitioning; Function of strongly homologous gene; enzyme.
  
     0.567
CCH87296.1
Homologs of previously reported genes of unknown function.
  
     0.561
CCH90058.1
Homologs of previously reported genes of unknown function.
  
     0.555
CCH87551.1
Homologs of previously reported genes of unknown function.
  
     0.542
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.