STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90229.1Putative stress-responsive transcriptional regulator (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (84 aa)    
Predicted Functional Partners:
CCH89715.1
Phage shock protein A, PspA; Function of strongly homologous gene; cell process.
  
 
 0.875
CCH90228.1
Two-component signal transduction histidine kinase (transduction signal); Function of strongly homologous gene; regulator.
 
    0.815
CCH90875.1
Homologs of previously reported genes of unknown function.
  
    0.679
pspC
Phage shock protein C, PspC; Function of strongly homologous gene; cell process.
 
   
0.645
CCH90227.1
Function of strongly homologous gene; regulator.
  
    0.549
CCH90231.1
Homologs of previously reported genes of unknown function.
       0.494
CCH90658.1
Sensor protein with an histidine kinase signal transduction domain; Function of strongly homologous gene; regulator.
   
 
 0.452
CCH89739.1
Homologs of previously reported genes of unknown function.
  
  
 0.429
CCH90404.1
Phage shock protein C, PspC; Function of strongly homologous gene; regulator.
  
     0.407
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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