STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
whiB-6Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. (99 aa)    
Predicted Functional Partners:
whiB-2
Transcription factor WhiB (fragment); Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
 
     0.745
CCH89794.1
Homologs of previously reported genes of unknown function.
  
     0.696
CCH88096.1
Transcriptional regulator, MerR family; Function of strongly homologous gene; regulator.
  
   
 0.672
CCH89970.1
Putative sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
   
 0.631
whiB-4
Transcription factor, WhiB family; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
   
 0.604
whiA
Sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
      
 0.578
CCH88858.1
YGGT family protein; Homologs of previously reported genes of unknown function.
  
     0.577
CCH90510.1
Homologs of previously reported genes of unknown function.
  
     0.552
gpmB-2
Phosphoglycerate mutase; Function of strongly homologous gene; enzyme.
  
     0.548
CCH89724.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.539
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.