STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90264.1Integrase catalytic region; Function of strongly homologous gene; enzyme. (187 aa)    
Predicted Functional Partners:
CCH90263.1
Integrase, catalytic core; Function of strongly homologous gene; enzyme.
     0.951
CCH89458.1
Membrane protein of unknown function; No homology to any previously reported sequences.
  
     0.603
CCH88486.1
Metallophosphoesterase; Function of strongly homologous gene; enzyme.
  
     0.555
fdhD
Formate dehydrogenase formation protein; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
       0.496
CCH87588.1
Putative HNH endonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
     0.494
CCH88831.1
Putative HNH endonuclease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.457
CCH85798.1
Transposase, IS116/IS110/IS902 family; Function of strongly homologous gene; enzyme.
 
    0.407
CCH86963.1
Transposase IS116/IS110/IS902 family; Function of strongly homologous gene; enzyme.
 
    0.407
CCH87975.1
Transposase.
 
    0.406
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.