STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH90319.1Putative alanine aminopeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (469 aa)    
Predicted Functional Partners:
CCH90320.1
Acyl dehydratase; Function of strongly homologous gene; enzyme.
  
    0.779
CCH90321.1
Acyl dehydratase; Function of strongly homologous gene; enzyme; Belongs to the UPF0336 family.
  
    0.777
cbs
Cystathionine beta-synthase; Function of strongly homologous gene; enzyme.
    
 0.758
rpmG
50S ribosomal protein L33 2; Function of strongly homologous gene; structure; Belongs to the bacterial ribosomal protein bL33 family.
       0.668
CCH90928.1
Protein of unknown function; No homology to any previously reported sequences.
 
    0.612
sucA
2-oxoglutarate decarboxylase; Function of strongly homologous gene; enzyme.
   
   0.509
fusB
Elongation factor G; Function of strongly homologous gene; factor.
   
 
 0.462
fusA
Elongation factor G (EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
   
 
 0.462
CCH88837.1
Membrane metallopeptidase; Function of strongly homologous gene; enzyme.
 
 
 0.445
CCH87746.1
Homologs of previously reported genes of unknown function.
  
     0.442
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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