STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90330.1Putative Lysophospholipase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (260 aa)    
Predicted Functional Partners:
mgtA
GDP-mannose-dependent alpha-mannosyltransferase; Function of strongly homologous gene; enzyme.
 
      0.873
htpX
Membrane-associated Zn-dependent endopeptidase; Function of strongly homologous gene; enzyme; Belongs to the peptidase M48B family.
       0.775
CCH86819.1
Homologs of previously reported genes of unknown function.
  
     0.595
CCH90467.1
DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains; Function of strongly homologous gene; enzyme.
  
    0.570
korA
2-oxoacid:ferredoxin oxidoreductase, alpha subunit; Function of strongly homologous gene; enzyme.
       0.500
korB
2-oxoacid:ferredoxin oxidoreductase, beta subunit; Function of strongly homologous gene; enzyme.
       0.500
CCH90604.1
Two component signal transduction tyrosine/serine phosphatase; Function of strongly homologous gene; enzyme.
     
 0.447
CCH86069.1
Homologs of previously reported genes of unknown function.
  
     0.444
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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