STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCH90369.1Alkyl hydroperoxide reductase/ Thiol specific antioxidant; Function of strongly homologous gene; enzyme. (190 aa)    
Predicted Functional Partners:
CCH90368.1
Cytochrome c biogenesis protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
 0.948
gpmB-2
Phosphoglycerate mutase; Function of strongly homologous gene; enzyme.
       0.836
hemL
Glutamate-1-semialdehyde 2,1-aminomutase; Function of strongly homologous gene; enzyme.
  
    0.836
CCH87384.1
Cytochrome c biogenesis protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
 0.779
CCH87052.1
Cytochrome c-type biogenesis protein CcdA; Function of strongly homologous gene; enzyme.
 
  
 0.767
CCH90367.1
ResB protein required for cytochrome c biosynthesis; Function of strongly homologous gene; cell process.
  
  
 0.688
ccsB-2
Cytochrome c-type biogenesis protein CcsB; Function of strongly homologous gene; structure.
  
  
 0.658
metH
B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.656
hemD
Uroporphyrinogen-III C-methyltransferase; Function of strongly homologous gene; enzyme.
     
 0.617
CCH86438.1
L-threonine ammonia-lyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
  0.593
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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