STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpmB-2Phosphoglycerate mutase; Function of strongly homologous gene; enzyme. (210 aa)    
Predicted Functional Partners:
hemL
Glutamate-1-semialdehyde 2,1-aminomutase; Function of strongly homologous gene; enzyme.
  
    0.964
CCH87370.1
Alkyl hydroperoxide reductase/ Thiol specific antioxidant; Function of strongly homologous gene; enzyme.
  
   0.944
CCH90368.1
Cytochrome c biogenesis protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
    0.858
CCH90369.1
Alkyl hydroperoxide reductase/ Thiol specific antioxidant; Function of strongly homologous gene; enzyme.
  
    0.830
CCH90367.1
ResB protein required for cytochrome c biosynthesis; Function of strongly homologous gene; cell process.
 
    0.800
CCH89331.1
Homologs of previously reported genes of unknown function.
  
     0.759
CCH88096.1
Transcriptional regulator, MerR family; Function of strongly homologous gene; regulator.
  
     0.750
whiB-3
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.748
CCH88858.1
YGGT family protein; Homologs of previously reported genes of unknown function.
 
     0.736
rbpA
Conserved protein of unknown function; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.728
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.