STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH90400.1Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (260 aa)    
Predicted Functional Partners:
CCH85858.1
Mixed type I polyketide synthase-non ribosomal peptide synthetase; Function of strongly homologous gene; enzyme.
 
    0.901
CCH90807.1
Mixed type I polyketide synthase-non ribosomal peptide synthetase; Function of strongly homologous gene; enzyme.
 
    0.901
CCH87256.1
AMP-dependent synthetase and ligase (fragment); Function of strongly homologous gene; enzyme.
 
 
  
 0.692
CCH88363.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
  
    0.613
CCH89421.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
  
    0.599
CCH88357.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.593
CCH90398.1
Homologs of previously reported genes of unknown function.
       0.570
CCH90397.1
Drug resistance transporter, EmrB/QacA subfamily; Function of strongly homologous gene; transporter; Belongs to the major facilitator superfamily.
 
    0.536
CCH88452.1
Short-chain dehydrogenase/reductase SDR; Function of strongly homologous gene; enzyme.
  
    0.533
mshA
UDP-Glycosyltransferase/glycogen phosphorylase; Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2- deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway.
       0.521
Your Current Organism:
Modestobacter marinus
NCBI taxonomy Id: 477641
Other names: CGMCC 4.5581, DSM 45201, M. marinus, Modestobacter marinus Xiao et al. 2011, Modestobacter sp. 42H12-1, strain 42H12-1
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